Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs28815564 chr13:114935098 C/T 3.94E-5 109 14.22 19.33 2.55 KM Plot
LAML rs28826084 chr14:90794347 C/T 2.07E-6 111 12.18 21.27 1.03 KM Plot
LAML rs28841673 chr19:16220643 T/C 0.000133 107 16.2 8.13 0 KM Plot
LAML rs28855197 chr19:16220445 A/T 0.000133 107 16.2 8.13 0 KM Plot
LAML rs28880082 chr11:93160926 G/A 7.38E-5 108 6.13 14.13 16.3 KM Plot
LAML rs2892159 chr10:855061 G/A 6.22E-6 110 16.3 15.7 6.12 KM Plot
LAML rs2935708 chr10:123491345 G/A 0.000161 106 16.27 9.13 0 KM Plot
LAML rs2986592 chr13:21843561 G/T 2.06E-8 107 16.23 12.65 0 KM Plot
LAML rs2993271 chr13:113621815 T/C 0.000129 110 0 14.17 15.23 KM Plot
LAML rs3020074 chr11:93161583 A/G 5.99E-5 110 6.13 14.13 16.3 KM Plot
LAML rs3049924 chr2:238395789 T/TCCGCC 0.000115 111 12.65 21.32 0 KM Plot
LAML rs3055106 chr6:127594214 C/CTT 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs3095726 chr19:38229824 T/C 2.45E-8 108 0 14.67 16.17 KM Plot
LAML rs3100813 chr11:93195803 C/T 6.87E-5 108 6.13 12.17 16.3 KM Plot
LAML rs3133443 chr11:93187807 T/A 6.87E-5 108 6.13 12.17 16.3 KM Plot